Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005373.1 Corchorus capsularis cultivar CVL-1 contig05391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10982
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:2009 original size:2 final size:2

Alignment explanation


    Indices: 2002--2035  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1992 TCTTTATTTA

                                                              
       2002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       2036 TGCTTCTGAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.