Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005374.1 Corchorus capsularis cultivar CVL-1 contig05392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9951

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2961--2994
2
17.0
2
100
0
68
50
0
0
50
1.00
4574--4627
24
2.3
24
81
9
58
31
7
12
48
1.69
6437--6468
10
3.4
10
83
16
50
37
9
0
53
1.34
7424--7858
166
2.6
167
85
2
561
40
16
14
29
1.87
8510--8546
3
12.3
3
100
0
74
67
0
0
32
0.91
9008--9108
22
5.0
22
68
22
87
51
19
1
26
1.58
9008--9125
59
2.0
59
94
0
209
51
18
4
25
1.64
9029--9094
37
1.9
35
82
14
84
54
16
3
25
1.56
9290--9342
3
17.0
3
88
7
79
62
0
1
35
1.06
9525--9565
20
2.0
21
85
4
57
19
41
7
31
1.79
9533--9571
21
1.9
20
84
5
51
15
43
12
28
1.83

Tables:   1

The End!