Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005375.1 Corchorus capsularis cultivar CVL-1 contig05393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10326
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36


Found at i:13 original size:2 final size:2

Alignment explanation


    Indices: 7--44  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

          1 TTATGC

                                                                    
          7 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

         45 GGTTACTTAT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:3407 original size:1 final size:1

Alignment explanation


    Indices: 3401--3426  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

       3391 GCAAGAGAGG

                                      
       3401 TTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTT

       3427 ATATAAAAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.