Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005386.1 Corchorus capsularis cultivar CVL-1 contig05404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13502

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
183--225
19
2.1
21
84
16
56
27
6
2
62
1.33
391--493
22
4.6
22
69
11
75
34
9
18
36
1.84
465--532
26
2.7
26
75
4
68
29
7
25
38
1.83
645--929
22
12.8
21
69
17
98
41
10
14
34
1.79
722--822
21
4.6
22
74
15
84
44
10
12
31
1.77
1035--1085
19
2.6
20
78
6
59
45
9
17
27
1.80
1094--1196
43
2.4
42
82
11
111
40
10
11
36
1.76
1065--1569
22
23.5
22
69
10
197
38
9
16
35
1.82
1224--1290
16
3.8
16
70
21
53
37
7
17
37
1.79
1202--1312
38
2.9
38
91
0
168
41
8
17
33
1.78
1301--1402
23
4.5
23
76
3
91
37
7
13
41
1.74
2849--2884
16
2.2
16
90
0
54
55
13
16
13
1.69
2918--3094
91
1.9
91
89
0
273
35
10
20
32
1.88
7786--7818
1
33.0
1
100
0
66
100
0
0
0
0.00
8210--8239
14
2.1
14
100
0
60
50
0
13
36
1.42
10898--10934
15
2.5
15
91
8
58
40
2
0
56
1.13
10887--10957
15
3.8
17
75
24
56
38
2
5
53
1.39
12327--12376
20
2.5
19
78
9
55
44
6
6
44
1.53

Tables:   1

The End!