Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005389.1 Corchorus capsularis cultivar CVL-1 contig05407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2536

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170--194
9
2.8
9
100
0
50
16
0
0
84
0.63
1288--1346
30
1.9
30
86
10
84
28
18
6
45
1.75
1288--1353
31
2.1
31
83
10
82
30
16
7
45
1.75
1623--1745
22
5.6
22
72
9
74
43
12
12
32
1.79
1846--1971
44
2.8
44
81
11
134
41
8
12
37
1.74
1845--2141
22
13.6
21
67
17
101
40
8
14
36
1.77
2038--2139
23
4.5
23
83
3
118
37
7
14
40
1.75
2106--2152
22
2.1
22
92
0
76
34
10
14
40
1.81
2218--2301
22
3.8
22
75
6
80
35
10
16
36
1.84

Tables:   1

The End!