Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005392.1 Corchorus capsularis cultivar CVL-1 contig05410, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13888
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:4875 original size:17 final size:18

Alignment explanation


    Indices: 4853--4887  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

       4843 GCTTAACTAT

                              
       4853 ATAGATAGA-AGTATAAA
          1 ATAGATAGATAGTATAAA

                   *          
       4870 ATAGATATATAGTATAAA
          1 ATAGATAGATAGTATAAA

       4888 CCGCCCTTGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29


Consensus pattern (18 bp):   
ATAGATAGATAGTATAAA

Found at i:10542 original size:16 final size:16

Alignment explanation


    Indices: 10517--10548  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

      10507 ATAATCTTTG

                            
      10517 GATGGATTCATGTTTT
          1 GATGGATTCATGTTTT

                 *          
      10533 GATGGGTTCATGTTTT
          1 GATGGATTCATGTTTT

      10549 ATGTTGGGTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50


Consensus pattern (16 bp):   
GATGGATTCATGTTTT
Done.