Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005397.1 Corchorus capsularis cultivar CVL-1 contig05415, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4197
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.22


Found at i:4044 original size:28 final size:28

Alignment explanation


    Indices: 4010--4091  Score: 94
    Period size: 28  Copynumber: 2.9  Consensus size: 28

       4000 TAGCCAAAGA

                     *           *       
       4010 TGCCGCAACAACCCAAAAATTGCAAAA-T
          1 TGCCGCAACTACCC-AAAATTACAAAATT

                    *           *       
       4038 TGCCGCAAGTACCCAAAATTCCAAAATT
          1 TGCCGCAACTACCCAAAATTACAAAATT

             *         *              
       4066 TTCCGCAACTAGCCAAAATTACAAAA
          1 TGCCGCAACTACCCAAAATTACAAAA

       4092 AACCCCGTAA


Statistics
Matches: 46,  Mismatches: 7, Indels: 2
        0.84            0.13        0.04

Matches are distributed among these distances:
  27   11  0.24
  28   35  0.76

ACGTcount: A:0.44, C:0.28, G:0.10, T:0.18


Consensus pattern (28 bp):   
TGCCGCAACTACCCAAAATTACAAAATT
Done.