Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005399.1 Corchorus capsularis cultivar CVL-1 contig05417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17087

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
709--846
68
2.0
69
92
1
233
45
5
4
44
1.45
1099--1308
21
10.0
21
87
3
280
24
11
22
40
1.88
1099--1308
63
3.4
62
91
2
330
24
11
22
40
1.88
1275--1398
64
1.9
64
85
3
169
21
11
23
43
1.85
2731--3068
168
2.0
168
93
0
577
34
14
22
28
1.94
3256--3408
82
1.9
77
93
6
261
49
9
11
30
1.70
3926--3952
13
2.1
13
100
0
54
37
22
7
33
1.82
4635--4668
2
17.5
2
93
6
61
50
0
0
50
1.00
4896--5020
40
3.0
40
92
3
205
46
8
11
33
1.71
9288--9681
131
3.0
131
99
0
779
33
13
15
37
1.87
16643--16682
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!