Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005404.1 Corchorus capsularis cultivar CVL-1 contig05422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5639
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:5458 original size:2 final size:2

Alignment explanation


    Indices: 5451--5489  Score: 71
    Period size: 2  Copynumber: 20.0  Consensus size: 2

       5441 TAAGGTTATG

                                                                       
       5451 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       5490 GATTGTTGAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   35  0.97

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.