Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005409.1 Corchorus capsularis cultivar CVL-1 contig05427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2933
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:2372 original size:2 final size:2

Alignment explanation


    Indices: 2365--2404  Score: 80
    Period size: 2  Copynumber: 20.0  Consensus size: 2

       2355 TTGTAGGCTA

                                                                       
       2365 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

       2405 CAAAATTGGA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   38  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.