Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000541.1 Corchorus capsularis cultivar CVL-1 contig00541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5548
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36


Found at i:1212 original size:60 final size:62

Alignment explanation


    Indices: 1139--1259  Score: 219
    Period size: 60  Copynumber: 2.0  Consensus size: 62

       1129 CAAATGAAAT

                                                                          
       1139 TTTAATTCTTGATTAATTAGTTCTTGTCATCCTAATTAGCATA-TT-TTTTGCATTAGCATA
          1 TTTAATTCTTGATTAATTAGTTCTTGTCATCCTAATTAGCATATTTCTTTTGCATTAGCATA

                   *                                                     
       1199 TTTAATTTTTGATTAATTAGTTCTTGTCATCCTAATTAGCATATTTCTTTTGCATTAGCAT
          1 TTTAATTCTTGATTAATTAGTTCTTGTCATCCTAATTAGCATATTTCTTTTGCATTAGCAT

       1260 TTTTTTTTCA


Statistics
Matches: 58,  Mismatches: 1, Indels: 2
        0.95            0.02        0.03

Matches are distributed among these distances:
  60   42  0.72
  61    2  0.03
  62   14  0.24

ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51


Consensus pattern (62 bp):   
TTTAATTCTTGATTAATTAGTTCTTGTCATCCTAATTAGCATATTTCTTTTGCATTAGCATA
Done.