Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005414.1 Corchorus capsularis cultivar CVL-1 contig05432, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5902
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:487 original size:18 final size:20

Alignment explanation


    Indices: 464--508  Score: 67
    Period size: 20  Copynumber: 2.4  Consensus size: 20

        454 AACGTTGAAG

                          *     
        464 TTATAACCT-T-AATTTTTT
          1 TTATAACCTCTAAAGTTTTT

                                
        482 TTATAACCTCTAAAGTTTTT
          1 TTATAACCTCTAAAGTTTTT

                   
        502 TTATAAC
          1 TTATAAC

        509 TGGTTATTAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  18    9  0.38
  19    1  0.04
  20   14  0.58

ACGTcount: A:0.31, C:0.13, G:0.02, T:0.53


Consensus pattern (20 bp):   
TTATAACCTCTAAAGTTTTT

Found at i:1460 original size:2 final size:2

Alignment explanation


    Indices: 1453--1491  Score: 78
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       1443 GCATTACTAG

                                                                      
       1453 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1492 CACTTCATCT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Done.