Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005415.1 Corchorus capsularis cultivar CVL-1 contig05433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11974

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
601--625
13
1.9
13
100
0
50
32
0
20
48
1.50
4338--4401
29
2.1
30
83
11
78
40
10
20
28
1.86
5268--5296
7
4.1
7
100
0
58
72
0
27
0
0.85
5259--5302
14
2.9
15
86
13
63
72
0
27
0
0.85
5233--5296
21
3.2
20
76
8
58
73
1
23
1
1.01
5232--5301
9
8.0
9
82
10
67
74
1
22
1
0.98
5454--5505
22
2.2
23
86
10
70
48
0
1
50
1.12
5768--5828
27
2.4
26
89
8
90
8
11
8
72
1.29
8132--8312
16
11.6
16
75
12
144
9
17
35
37
1.82
8134--8281
32
4.7
33
81
9
166
8
16
36
37
1.80
8133--8310
48
3.8
46
81
7
200
8
17
35
37
1.81
8667--8703
13
2.8
13
87
4
56
18
13
0
67
1.23
8783--8821
21
2.0
21
85
10
55
53
5
7
33
1.51
8846--8981
16
8.5
16
73
9
80
9
16
37
36
1.81
8845--8933
32
2.8
32
85
11
119
7
15
37
39
1.77

Tables:   1

The End!