Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005421.1 Corchorus capsularis cultivar CVL-1 contig05439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3275
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:2169 original size:22 final size:22

Alignment explanation


    Indices: 2142--2205  Score: 83
    Period size: 22  Copynumber: 2.9  Consensus size: 22

       2132 TACCATCATG

                         *      * 
       2142 TGGCCGAATCTCATGACCACTA
          1 TGGCCGAATCTCACGACCACCA

                       *   *      
       2164 TGGCCGAATCTTACGGCCACCA
          1 TGGCCGAATCTCACGACCACCA

                           *    
       2186 TGGCCGAATCTCACGGCCAC
          1 TGGCCGAATCTCACGACCAC

       2206 AGTTTTTAGT


Statistics
Matches: 37,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   37  1.00

ACGTcount: A:0.23, C:0.36, G:0.22, T:0.19


Consensus pattern (22 bp):   
TGGCCGAATCTCACGACCACCA
Done.