Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005423.1 Corchorus capsularis cultivar CVL-1 contig05441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8714

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2398--2983
22
26.6
21
68
13
204
37
10
15
36
1.82
2438--2510
38
1.9
38
88
0
110
42
8
15
34
1.76
2417--2533
60
1.9
61
84
1
155
41
7
15
35
1.76
2398--2895
22
22.6
22
69
9
210
36
10
15
37
1.83
2477--2739
45
5.9
44
72
12
137
34
11
15
38
1.83
2477--2850
156
2.4
156
95
0
667
33
10
15
39
1.82
2620--2747
68
1.9
66
80
12
145
33
11
14
39
1.83
2953--3104
62
2.5
62
92
0
241
43
8
13
34
1.74
2952--3060
22
5.1
22
67
14
68
44
9
13
32
1.75
3165--3194
2
15.0
2
100
0
60
50
0
0
50
1.00
4548--4589
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!