Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005430.1 Corchorus capsularis cultivar CVL-1 contig05448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20439

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
592--687
36
2.6
36
88
6
131
43
9
19
27
1.81
5887--5957
29
2.4
27
77
22
81
43
16
1
38
1.57
6632--6672
17
2.4
17
88
12
57
82
0
17
0
0.66
6639--6672
12
2.9
12
95
4
61
85
0
14
0
0.60
6864--6918
27
2.1
26
89
3
83
43
3
1
50
1.30
9629--9667
19
2.1
19
100
0
78
41
20
5
33
1.74
10942--11053
2
60.5
2
69
18
55
54
2
0
41
1.20
10966--11039
20
3.5
20
82
14
62
59
4
0
36
1.16
10985--11040
20
2.8
20
80
19
64
58
3
0
37
1.15
10988--11053
7
9.6
7
76
14
57
57
3
0
39
1.14
10958--11040
22
3.7
22
77
18
91
57
3
0
38
1.16
10936--11053
11
10.7
11
69
18
59
54
2
0
42
1.20
16458--16527
31
2.2
31
87
2
104
38
12
12
35
1.82
16935--16987
26
2.0
26
92
0
88
35
5
5
52
1.49

Tables:   1

The End!