Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005439.1 Corchorus capsularis cultivar CVL-1 contig05457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11450
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28


Found at i:5949 original size:49 final size:49

Alignment explanation


    Indices: 5877--5974  Score: 187
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       5867 CACTAAATTA

                                                             
       5877 CGACTCAAATTTAAGATCCCCATTCCCCACCACGAATTTTACCTAATCC
          1 CGACTCAAATTTAAGATCCCCATTCCCCACCACGAATTTTACCTAATCC

                                               *             
       5926 CGACTCAAATTTAAGATCCCCATTCCCCACCACGATTTTTACCTAATCC
          1 CGACTCAAATTTAAGATCCCCATTCCCCACCACGAATTTTACCTAATCC

       5975 TTAATCACTT


Statistics
Matches: 48,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  49   48  1.00

ACGTcount: A:0.30, C:0.37, G:0.06, T:0.28


Consensus pattern (49 bp):   
CGACTCAAATTTAAGATCCCCATTCCCCACCACGAATTTTACCTAATCC
Done.