Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000544.1 Corchorus capsularis cultivar CVL-1 contig00544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1346

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
172--267
38
2.5
38
81
6
113
51
8
19
20
1.73
259--331
32
2.3
31
81
6
83
45
6
26
21
1.77
404--513
32
3.5
32
83
3
136
54
3
24
17
1.59
492--634
40
3.6
40
97
0
259
54
2
19
23
1.57
633--666
16
2.1
17
88
5
52
58
2
20
17
1.51
492--688
40
5.0
39
83
13
153
54
3
20
21
1.58
678--786
32
3.5
32
76
20
115
53
3
18
24
1.61
678--760
32
2.5
33
84
13
116
53
3
19
24
1.61
693--787
26
3.4
26
83
12
93
52
4
16
26
1.62
789--912
7
17.9
7
74
7
92
57
3
22
16
1.54
772--891
28
4.5
27
77
18
119
56
3
22
17
1.55
831--913
35
2.4
35
86
8
107
57
3
21
16
1.54
772--895
49
2.5
49
94
2
214
56
3
23
16
1.55
772--920
28
5.3
29
75
14
107
57
3
21
17
1.54
922--1006
29
2.8
29
76
5
80
56
4
23
15
1.58
990--1016
13
2.1
13
100
0
54
48
7
22
22
1.75
1003--1178
40
4.4
40
95
0
316
52
2
21
23
1.59
1003--1177
80
2.2
80
100
0
350
52
2
21
23
1.60
1176--1209
16
2.1
17
88
5
52
58
2
20
17
1.51
1224--1329
33
3.4
31
75
18
112
53
3
17
24
1.60
1239--1335
32
3.4
27
79
12
88
53
4
16
25
1.60
1239--1335
27
3.4
27
80
12
88
53
4
16
25
1.60

Tables:   1

The End!