Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005442.1 Corchorus capsularis cultivar CVL-1 contig05460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2042
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34


Found at i:1384 original size:18 final size:19

Alignment explanation


    Indices: 1361--1398  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       1351 GAAATAGGAT

                               
       1361 TTCAAATCCAACAGA-AGA
          1 TTCAAATCCAACAGATAGA

                   *           
       1379 TTCAAATTCAACAGATAGA
          1 TTCAAATCCAACAGATAGA

             
       1398 T
          1 T

       1399 AGGATAAATC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18   14  0.78
  19    4  0.22

ACGTcount: A:0.47, C:0.18, G:0.11, T:0.24


Consensus pattern (19 bp):   
TTCAAATCCAACAGATAGA

Done.