Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005446.1 Corchorus capsularis cultivar CVL-1 contig05464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7041
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:1548 original size:12 final size:12

Alignment explanation


    Indices: 1531--1560  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       1521 CTTGAGAAAA

                    *   
       1531 TATTTTCCTTAG
          1 TATTTTCCATAG

                        
       1543 TATTTTCCATAG
          1 TATTTTCCATAG

                  
       1555 TATTTT
          1 TATTTT

       1561 TCTTGACACC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60


Consensus pattern (12 bp):   
TATTTTCCATAG

Found at i:2653 original size:17 final size:17

Alignment explanation


    Indices: 2633--2678  Score: 83
    Period size: 17  Copynumber: 2.7  Consensus size: 17

       2623 TTACACTTAA

                             
       2633 AAACTATTATAGAAAAT
          1 AAACTATTATAGAAAAT

                             
       2650 AAACTATTATAGAAAAT
          1 AAACTATTATAGAAAAT

              *         
       2667 AATCTATTATAG
          1 AAACTATTATAG

       2679 TGCACTTACT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  17   28  1.00

ACGTcount: A:0.54, C:0.07, G:0.07, T:0.33


Consensus pattern (17 bp):   
AAACTATTATAGAAAAT
Done.