Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01005447.1 Corchorus capsularis cultivar CVL-1 contig05465, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4018
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Found at i:643 original size:322 final size:316
Alignment explanation
Indices: 9--792 Score: 902
Period size: 322 Copynumber: 2.5 Consensus size: 316
1 TCAAATTC
* * * * * * * *
9 CAGCCACATAGGATTAAAGGATTTATTTTTATGAGCATCTCAAGCTTGTTTCGATTTAATTATAA
1 CAGCCACATTGGATTTAAGGAGTTGTTTTTACGAGCATCTAAATCTTATTTCGATTTAATTATAA
* * ** * * * * * * **
74 ATAAATTCAGGAAAAAAAGAAAAAAACAATATTAGAAA-CATGATAGACTCTTCAGTCTTTTTGG
66 ATAAATTC--GAAAAAATG-GAAAAATGATATTCGAAAGCATAAAAAACCCTTCAAT-TTTTTTT
* * * * ***
138 TG--TTGAATTATATA-TTCTTTCTGAGTATTGTG-GCAACAATTTTTTTTAAAAAATTTTCGGG
127 TGCATTAAATTATATATTTTTTTCTGAGTATTGTGACCAA-AA--ATTCAGAAAAAATTTTCGGG
* *
199 TCAGTTTTTAGCCGAAAATCGTATACGTGGTTTTTGGGCTAAAAACACATTTCGGGACTCCGGCT
189 TCAGTTTTTAGCCGAAAATCGTATACATCGTTTTTGGGCTAAAAACACATTTCGGGACTCCGGCT
* * *
264 CAGTTTTGCAAGATTTTCGGTAGAAAGGCTGCTTGAAATATCTATGTTCATCAAACCAAATCT
254 CAGTTTTGCAAGATTTTCGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCT
* * * **
327 CAGCCATATTGGGTTTAAGGATTTGTTTTTACGAGCATCTAAATCTTATTTTTATTTAATTATAA
1 CAGCCACATTGGATTTAAGGAGTTGTTTTTACGAGCATCTAAATCTTATTTCGATTTAATTATAA
* *
392 ATAAATTCGAAAAAAATGGAAAAATGATATTCG-AAGCATGAAAATCCCTTCAAATTTTTTTTTG
66 ATAAATTCG-AAAAAATGGAAAAATGATATTCGAAAGCATAAAAAACCCTTC-AATTTTTTTTTG
456 CATTAAATTATATATTTTTTTCTGAGTATTGTGACCAAAAATTCAGAAAAAATTTTCGGGTCAGT
129 CATTAAATTATATATTTTTTTCTGAGTATTGTGACCAAAAATTCAGAAAAAATTTTCGGGTCAGT
* *
521 TTTTAGCCG-AAATCGTATACTAACCATCACGTTTTTGGGCT-AAAACGCGTTTCGGGA-TCCTG
194 TTTTAGCCGAAAATCG--TA-T-A-CAT--CGTTTTTGGGCTAAAAACACATTTCGGGACTCC-G
* * * *
583 GCTCAGTTTTGCACGATTTTTGGCAGAAAGACTGCTTGAAATATTTATATTCATCAAACCAAATT
251 GCTCAGTTTTGCAAGATTTTCGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATC
648 T
316 T
* * *
649 CAGTCACATTGGATTTAAGGAGTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTATAA
1 CAGCCACATTGGATTTAAGGAGTTGTTTTTACGAGCATCTAAATCTTATTTCGATTTAATTATAA
*
714 ATAAATTCGAAAAAATGGAAAAATGATATTCGAAAGCATAAAAAACCCTTCATTTTTTTTTTGCA
66 ATAAATTCGAAAAAATGGAAAAATGATATTCGAAAGCATAAAAAACCCTTCAATTTTTTTTTGCA
*
779 TTGAATTATATATT
131 TTAAATTATATATT
793 ATTCTGTTAA
Statistics
Matches: 397, Mismatches: 53, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
315 2 0.01
316 36 0.09
317 39 0.10
318 75 0.19
319 20 0.05
320 4 0.01
321 54 0.14
322 156 0.39
323 11 0.03
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37
Consensus pattern (316 bp):
CAGCCACATTGGATTTAAGGAGTTGTTTTTACGAGCATCTAAATCTTATTTCGATTTAATTATAA
ATAAATTCGAAAAAATGGAAAAATGATATTCGAAAGCATAAAAAACCCTTCAATTTTTTTTTGCA
TTAAATTATATATTTTTTTCTGAGTATTGTGACCAAAAATTCAGAAAAAATTTTCGGGTCAGTTT
TTAGCCGAAAATCGTATACATCGTTTTTGGGCTAAAAACACATTTCGGGACTCCGGCTCAGTTTT
GCAAGATTTTCGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCT
Found at i:2336 original size:642 final size:631
Alignment explanation
Indices: 1315--3134 Score: 1906
Period size: 646 Copynumber: 2.8 Consensus size: 631
1305 CCGACTCAGT
* * * * * *
1315 TTTGCAAGATTTTTGGCAGAAAGACAGCTTGAAATATCTATATTCATCAAACCATATCTCAACCA
1 TTTGCAAGATTTTTGGCAGAAACACTGCTTGAAATATCTATACTCATCAAAACAAATCTCAGCCA
* * * *
1380 CATTGGATT------TTTATTTTTACGAGCATCTAAATCTTGTTTCAATTTAATTATAA-ATAAA
66 CATTGGATTAAAGAATTTGTTTTTACGAGCATCTGAATATTATTT--ATTTAATTA-AATATAAA
** * *
1438 TTCGGGGGAAAAAAA-GGAAAAACGATATTAGAAGAATGAAAAACCCTTCAGTATTTTTGGCATT
128 TTC--GAAAAAAAAATGGAAAAATGATATTAGAAGAATGAAAAACCCTTCAAT-TTTTTGGC-TT
* *
1502 GAATTATATATTTTTTCTGAGTATTGTGGCAAACAATTGAGAAAAATATTTTCGGGTAAGTTTTT
189 AAATTATATA-TTTTTCTGAGTATTGTGGCAAA-AATTCAGAAAAATA-TTTCGGGTAAGTTTTT
* * * *
1567 AGCCGAAATCGTATATTAACCATCACGATTTTTGGGCTAAAAACGCGTTTAGGGATCCCGGCTGA
251 AGCCGAAATCGTATACTAA-CATCACGGTTTTT-GGCTAAAAACGCGTTTAGGGACCCCGGCTCA
* *
1632 GTTTTGCAAGATTTATGGCAGAAAGACTGCTTGAAATATCTATATTCATAAAACCAAATCTCAGC
314 GTTTTGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGC
* * *
1697 CACGTTGGATTTAA-TGATTTGCTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTATAAATA
379 CACATTGGATTTAAGT-ATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTATAAATA
* * *
1761 AATT-AGAAAAATGGAAAAATGATGTTCGAGGCATGAAAAACCCTTCAATTTTTTTTTTTGCATT
443 AATTCA-AAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTTTGCATA
* * ***
1825 GAATTATATATTTTTATGTTGATTGTGCCATAGAATTGAGGAAAAAATTTTCAGGTCAATTTTTT
507 GAATTATATATTTTT-T-CTGA--GT---ATAG---TG-GGAAAAAA--TACAGAAAAATTTTTT
* * *
1890 -TTAAATTTTAGCCGAAAATCGTGA-A-AATCACAGTTCTT-GG-CTAAAAACGCGTTCTGGGGC
559 GTCAAATTTTAGCCG-AAATCGT-ATAGAATCACAGTT-TTGGGACTAAAAACGCGTT-TCGGGA
* *
1950 TTTAG-CTC-AG
620 TCTAGTCTCAAA
* * * *
1960 TTTCGCATGATTTTTGTCATGAAA-ACTTCTTGAAATATCTATAACT-A-GAGAAACAAATC-CA
1 TTT-GCAAGATTTTTGGCA-GAAACACTGCTTGAAATATCTAT-ACTCATCA-AAACAAATCTCA
* *
2021 GCCACATTGGATTAAAGAATTT-TTTTTACGAGCATCT-AA-ATTATTT-TTTGATTTAAT-TAA
62 GCCACATTGGATTAAAGAATTTGTTTTTACGAGCATCTGAATATTATTTATTTAATTAAATATAA
*
2081 ATTCGGAAAAAAAAATGGAAAAATGATATTAGAAGAAAGAAAAACCCTTCAATGTTTTTGGCGTT
127 ATTC-GAAAAAAAAATGGAAAAATGATATTAGAAGAATGAAAAACCCTTCAAT-TTTTTGGC-TT
* * **
2146 AAATTATATATCTTTTCTGAGCATTGTGGCAAAAGATTCA-AAAAA-AATTCGATTAAGTTTTTA
189 AAATTATATAT-TTTTCTGAGTATTGTGGCAAAA-ATTCAGAAAAATATTTCGGGTAAGTTTTTA
* * *
2209 -CCTGAAATCATATACATATCATCACCGGTTTTTGGCCTAAAAACGCGTTTGGGGACCCCGGCTC
252 GCC-GAAATCGTATAC-TAACATCA-CGGTTTTTGG-CTAAAAACGCGTTTAGGGACCCCGGCTC
* * * *
2273 AGTTGTGCAAGATTTTTGACAGAGATACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAG
313 AGTTTTGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAG
* * *
2338 GCACATTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCCTGTTTCGATTTAATTATAAATA
378 CCACATTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTATAAATA
* * *
2403 AATTCAAAAAAAGGAAAAATGATATTCGAAGCATGAAAAACTCTTAAATTTTTTTTTTTGCATAG
443 AATTCAAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTTTGCATAG
* * **
2468 AATTATATATTTTTTCTGAGTATTGTGGTAAAAAATACAGAAAAATTTTTTCGAGTCAGTTTTTA
508 AATTATATATTTTTTCTGAGTATAGTGGGAAAAAATACAGAAAAATTTTTT---GTCAAATTTTA
* * *
2533 GCCGAAATCGTATAGTCATCACGGTTTTGGGGCTAACCTAAAAACGCGTTTCGGGATCTGGTCTC
570 GCCGAAATCGTATAG-AATCACAGTTTT-GGG---A-CTAAAAACGCGTTTCGGGATCTAGTCTC
2598 AAA
629 AAA
* * * * **
2601 TTTGCAAGATTTTTGGCAGAAACACTGCTTGAGATATCTGTATTCATCAAACCAAATCTCAGTTA
1 TTTGCAAGATTTTTGGCAGAAACACTGCTTGAAATATCTATACTCATCAAAACAAATCTCAGCCA
* * * * *
2666 CATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTAGATTTAATTAAATATAAAT
66 CATTGGATTAAAGAATTTGTTTTTACGAGCATCTGAATATTATTT--ATTTAATTAAATATAAAT
* * * * * *
2731 TCGAAAAAAAAAT-TAAAAATGATATTCGAAGCATGAAAAACTCTTCAATTTTGTTTGCATAGAA
129 TCGAAAAAAAAATGGAAAAATGATATTAGAAGAATGAAAAACCCTTCAATTTT-TTGGCTTA-AA
* * * * * *
2795 TTATAAATTTTTATTCAGTATTGCGGCAAAAAATTCAGAAAAATCTTTTGGGTAAGTTTTTAGCC
192 TTATATATTTTT-CTGAGTATTGTGGC-AAAAATTCAGAAAAATATTTCGGGTAAGTTTTTAGCC
* * ** * * *
2860 GAAATCGCAAACTAACTATCACGGTTTCAAGGCTAAAAATGCGTTTCGGGACTCCGGCTCAGTTT
255 GAAATCGTATACTAAC-ATCACGGTTT-TTGGCTAAAAACGCGTTTAGGGACCCCGGCTCAGTTT
*
2925 TG-AAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACA
318 TGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACA
*
2989 TTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTATAAATAAATTC
383 TTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTATAAATAAATTC
* *
3054 GAAAAAAATGGAAAAATGATATTTGAAGCATGAAAAACCCTTCAA--TTTTTGTTTGCATAGAAT
448 --AAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTTTGCATAGAAT
*
3117 TATATATTTTTTTTGAGT
511 TATATATTTTTTCTGAGT
3135 CAAGCATGAA
Statistics
Matches: 991, Mismatches: 126, Indels: 115
0.80 0.10 0.09
Matches are distributed among these distances:
629 12 0.01
631 8 0.01
632 10 0.01
633 13 0.01
634 8 0.01
635 5 0.01
638 2 0.00
639 13 0.01
640 58 0.06
641 57 0.06
642 236 0.24
643 20 0.02
644 91 0.09
645 33 0.03
646 249 0.25
647 75 0.08
648 79 0.08
649 4 0.00
650 15 0.02
651 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.36
Consensus pattern (631 bp):
TTTGCAAGATTTTTGGCAGAAACACTGCTTGAAATATCTATACTCATCAAAACAAATCTCAGCCA
CATTGGATTAAAGAATTTGTTTTTACGAGCATCTGAATATTATTTATTTAATTAAATATAAATTC
GAAAAAAAAATGGAAAAATGATATTAGAAGAATGAAAAACCCTTCAATTTTTTGGCTTAAATTAT
ATATTTTTCTGAGTATTGTGGCAAAAATTCAGAAAAATATTTCGGGTAAGTTTTTAGCCGAAATC
GTATACTAACATCACGGTTTTTGGCTAAAAACGCGTTTAGGGACCCCGGCTCAGTTTTGCAAGAT
TTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGGATTT
AAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTATAAATAAATTCAAAAAATG
GAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTTTGCATAGAATTATATATTTT
TTCTGAGTATAGTGGGAAAAAATACAGAAAAATTTTTTGTCAAATTTTAGCCGAAATCGTATAGA
ATCACAGTTTTGGGACTAAAAACGCGTTTCGGGATCTAGTCTCAAA
Found at i:2647 original size:325 final size:315
Alignment explanation
Indices: 1187--3134 Score: 1725
Period size: 321 Copynumber: 6.1 Consensus size: 315
1177 ACAGAGGGAG
* * * * **
1187 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAA-ATTGTCGGGTCAGTTTTTAGTAGA
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATTTTTTCGAGTAAGTTTTTAGCCGA
* * * *
1251 AATCGTATACTATTAACCATAACGGTTTTTGAGCTAAAAACGCGTTTCGAGACCCCGACTC-AGT
66 AATCG--TA-TA-T---CATCACGG-TTTTG-GCTAAAAACGCGTTTCGGGA-TCCGGCTCAAG-
* * *
1315 TTTGCAAGATTTTTGGCAGAAAGACAGCTTGAAATATCTATATTCATCAAACCATATCTCAACCA
120 TTTGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCA
* *
1380 CATTGGA--T---T-TTTATTTTTACGAGCATCTAAATCTTGTTTCAATTTAATTATAAATAAAT
185 CATTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTATAAATAAAT
* * * * * * *
1439 TCGGGGGAAAAAAAGGAAAAACGATATTAGAAGAATGAAAAACCCTTC-AGTATTTTTGGCATTG
250 TC----GAAAAAAAGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTGCATAG
1503 AATTA
311 AATTA
* * * *
1508 TATATTTTTTCTGAGTATTGTGGCAAACAATTGAGAAAAATATTTTCGGGTAAGTTTTTAGCCGA
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATTTTTTCGAGTAAGTTTTTAGCCGA
* * *
1573 AATCGTATATTAACCATCACGATTTTTGGGCTAAAAACGCGTTTAGGGATCCCGGCT-GAGTTTT
66 AATCGTATA-T---CATCACG-GTTTT-GGCTAAAAACGCGTTTCGGGAT-CCGGCTCAAG-TTT
* * *
1637 GCAAGATTTATGGCAGAAAGACTGCTTGAAATATCTATATTCATAAAACCAAATCTCAGCCACGT
123 GCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAT
* * * *
1702 TGGATTTAA-TGATTTGCTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTATAAATAAATTA
188 TGGATTTAAGT-ATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTATAAATAAATTC
* * * *
1766 G-AAAAATGGAAAAATGATGTTCGAGGCATGAAAAACCCTTCAATTTTTTTTTTTGCATTGAATT
252 GAAAAAAAGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAA--TTTTTTTTTGCATAGAATT
1830 A
315 A
* * * *** *
1831 TATATTTTTATGTTGATTGTGCCATAGAATTGAGGAAAAAATTTTCAGGTCAATTTTTT---TTA
1 TATATTTTT-T-CTGA--GT---ATTG---TG-GCAAAAAA--TTCAGAAAAATTTTTTCGAGTA
* * * * * ***
1893 A-ATTTTAGCCGAAAATCGTGA-A-AATCACAGTTCTTGGCTAAAAACGCGTTCTGGGGCTTTAG
53 AGTTTTTAGCCG-AAATCGT-ATATCATCACGGTT-TTGGCTAAAAACGCGTT-TCGGGATCCGG
* * * * * *
1955 CTC-AGTTTCGCATGATTTTTGTCATGAAA-ACTTCTTGAAATATCTATA-AC-TAGAGAAACAA
114 CTCAAGTTT-GCAAGATTTTTGGCA-GAAAGACTGCTTGAAATATCTATATTCAT-CA-AACCAA
* * * *
2016 ATC-CAGCCACATTGGATTAAAGAATTT-TTTTTACGAGCATCTAAA--TTATTT---TTTGATT
175 ATCTCAGCCACATTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATT
* * * * *
2074 -TAATTAAATTCGGAAAAAAAAATGGAAAAATGATATTAGAAGAAAGAAAAACCCTTCAA-TGTT
240 ATAAATAAATTC-G--AAAAAAA-GGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTT
* *
2137 TTTGGCGTTA-AATTA
301 TTTTGC-ATAGAATTA
* * * ** *
2152 TATATCTTTTCTGAGCATTGTGGCAAAAGATTCA-AAAAA--AATTCGATTAAGTTTTTA-CCTG
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATTTTTTCGAGTAAGTTTTTAGCC-G
* * *
2213 AAATCATATACATATCATCACCGGTTTTTGGCCTAAAAACGCGTTTGGGGACCCCGGCTC-AGTT
65 AAATC--GT--ATATCATCA-CGG-TTTTGG-CTAAAAACGCGTTTCGGGA-TCCGGCTCAAGTT
* * * *
2277 GTGCAAGATTTTTGACAGAGATACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGGCAC
122 -TGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCAC
*
2342 ATTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCCTGTTTCGATTTAATTATAAATAAATT
186 ATTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTATAAATAAATT
* *
2407 C-AAAAAAAGGAAAAATGATATTCGAAGCATGAAAAACTCTTAAATTTTTTTTTTTGCATAGAAT
251 CGAAAAAAAGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAA--TTTTTTTTTGCATAGAAT
2471 TA
314 TA
* * *
2473 TATATTTTTTCTGAGTATTGTGGTAAAAAATACAGAAAAATTTTTTCGAGTCAGTTTTTAGCCGA
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATTTTTTCGAGTAAGTTTTTAGCCGA
* *
2538 AATCGTATAGTCATCACGGTTTTGGGGCTAACCTAAAAACGCGTTTCGGGATCTGGTCTCAAATT
66 AATCGTATA-TCATCACGGTTTT--GG-----CTAAAAACGCGTTTCGGGATCCGG-CTCAAGTT
* * * **
2603 TGCAAGATTTTTGGCAGAAACACTGCTTGAGATATCTGTATTCATCAAACCAAATCTCAGTTACA
122 TGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACA
* * * *
2668 TTGGATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTAGATTTAATTA-AATATAAATT
187 TTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTATAA-ATAAATT
** * *
2732 CGAAAAAAAAATTAAAAATGATATTCGAAGCATGAAAAACTCTTCAA-TTTTGTTTGCATAGAAT
251 CG--AAAAAAAGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTGCATAGAAT
2796 TA
314 TA
* * * * *
2798 TAAATTTTTAT-TCAGTATTGCGGCAAAAAATTCAGAAAAATCTTTT-GGGTAAGTTTTTAGCCG
1 TATATTTTT-TCTGAGTATTGTGGCAAAAAATTCAGAAAAATTTTTTCGAGTAAGTTTTTAGCCG
* * * *
2861 AAATCGCAAACTAACTATCACGGTTTCAAGGCTAAAAATGCGTTTCGGGACTCCGGCTC-AGTTT
65 AAATCG--TA-TATC-ATCACGGTTT--TGGCTAAAAACGCGTTTCGGGA-TCCGGCTCAAG-TT
*
2925 TG-AAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACA
122 TGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACA
* *
2989 TTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTATAAATAAATTC
187 TTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTATAAATAAATTC
* *
3054 GAAAAAAATGGAAAAATGATATTTGAAGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTA
252 GAAAAAAA-GGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTGCATAGAATTA
*
3119 TATATTTTTTTTGAGT
1 TATATTTTTTCTGAGT
3135 CAAGCATGAA
Statistics
Matches: 1345, Mismatches: 179, Indels: 206
0.78 0.10 0.12
Matches are distributed among these distances:
305 2 0.00
307 2 0.00
308 15 0.01
309 6 0.00
310 7 0.01
311 3 0.00
312 1 0.00
313 4 0.00
314 17 0.01
315 62 0.05
316 24 0.02
317 20 0.01
318 31 0.02
319 143 0.11
320 86 0.06
321 261 0.19
322 65 0.05
323 51 0.04
324 78 0.06
325 261 0.19
326 31 0.02
327 76 0.06
328 56 0.04
330 3 0.00
332 9 0.01
333 13 0.01
334 7 0.01
336 11 0.01
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.36
Consensus pattern (315 bp):
TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATTTTTTCGAGTAAGTTTTTAGCCGA
AATCGTATATCATCACGGTTTTGGCTAAAAACGCGTTTCGGGATCCGGCTCAAGTTTGCAAGATT
TTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGGATTTA
AGTATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTATAAATAAATTCGAAAAAAAG
GAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTTGCATAGAATTA
Found at i:3012 original size:321 final size:319
Alignment explanation
Indices: 1187--3134 Score: 1855
Period size: 325 Copynumber: 6.1 Consensus size: 319
1177 ACAGAGGGAG
* * **
1187 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAA-ATTGTCGGGTCAGTTTTTAGTAGA
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATATT-TTGGGTAAGTTTTTAGCCGA
* * * * *
1251 AATCGTATACTATTAACCATAACGGTTT-TTGAGCTAAAAACGCGTTTCGAGACCCCGACTCAGT
65 AATCGTATAC---TAA-CATCACGGTTTCTAG-GCTAAAAACGCGTTTCGGGACTCCGGCTCAGT
* * *
1315 TTTGCAAGATTTTTGGCAGAAAGACAGCTTGAAATATCTATATTCATCAAACCATATCTCAACCA
125 TTTGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCA
* *
1380 CATTGGA--T---T-TTTATTTTTACGAGCATCTAAATCTTGTTTCAATTTAATTATAAATAAAT
190 CATTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTT-AATTTAATTATAAATAAAT
* * * * * * *
1439 TCGGGGGAAAAAAA-GGAAAAACGATATTAGAAGAATGAAAAACCCTTCAGTATTTTTGGCATTG
254 TC----GAAAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTGCATAG
1503 AATTA
315 AATTA
* *
1508 TATATTTTTTCTGAGTATTGTGGCAAACAATTGAGAAAAATATTTTCGGGTAAGTTTTTAGCCGA
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATATTTT-GGGTAAGTTTTTAGCCGA
* * * * * *
1573 AATCGTATATTAACCATCACGATTTTTGGGCTAAAAACGCGTTTAGGGA-TCCCGGCTGAGTTTT
65 AATCGTATACTAA-CATCACGGTTTCTAGGCTAAAAACGCGTTTCGGGACT-CCGGCTCAGTTTT
* * *
1637 GCAAGATTTATGGCAGAAAGACTGCTTGAAATATCTATATTCATAAAACCAAATCTCAGCCACGT
128 GCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAT
* * *
1702 TGGATTTAA-TGATTTGCTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTATAAATAAATT-
193 TGGATTTAAGT-ATTTGTTTTTACGAGCATCTGAATCTTGTTT-AATTTAATTATAAATAAATTC
* * * *
1765 -AGAAAAATGGAAAAATGATGTTCGAGGCATGAAAAACCCTTCAATTTTTTTTTTTGCATTGAAT
256 GAAAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAA---TTTTTTTTGCATAGAAT
1829 TA
318 TA
* * * * * * * *
1831 TATA-TTTTTATG-TTGATTGTGCCATAGAATTGAGGAAAAA-ATTTTCAGGTCAATTTTTTTTA
1 TATATTTTTTCTGAGT-ATTGTGGCAAAAAATTCA-GAAAAATATTTT-GGGT-AA------GT-
* * * * *
1893 AATTTTAGCCGAAAATCGT-GA--AA-ATCACAG-TTCTTGGCTAAAAACGCG-TTCTGGGGCTT
55 --TTTTAGCCG-AAATCGTATACTAACATCACGGTTTCTAGGCTAAAAACGCGTTTC-GGGACTC
** * * * * * * *
1952 TAGCTCAGTTTCGCATGATTTTTGTCATGAAA-ACTTCTTGAAATATCTATA-AC-TAGAGAAAC
116 CGGCTCAGTTTTGCAAGATTTTTGGCA-GAAAGACTGCTTGAAATATCTATATTCAT-CA-AACC
* * * * *
2014 AAATC-CAGCCACATTGGATTAAAGAATTT-TTTTTACGAGCATCT-AA-ATTATTT--TTTGAT
178 AAATCTCAGCCACATTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTAATTTAAT
* * * * *
2073 T-TAATTAAATTCGGAAAAAAAAATGGAAAAATGATATTAGAAGAAAGAAAAACCCTTCAATGTT
243 TATAAATAAATTC-G--AAAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTT
* *
2137 TTTGGCGTTA-AATTA
305 TTTTGC-ATAGAATTA
* * * * * **
2152 TATATCTTTTCTGAGCATTGTGGCAAAAGATTCA-AAAAA-AATTCGATTAAGTTTTTA-CCTGA
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATATTTTGGGTAAGTTTTTAGCC-GA
* * * * * *
2214 AATCATATACATATCATCACCGGTTT-TTGGCCTAAAAACGCGTTTGGGGACCCCGGCTCAGTTG
65 AATCGTATAC-TAACATCA-CGGTTTCTAGG-CTAAAAACGCGTTTCGGGACTCCGGCTCAGTTT
* * * *
2278 TGCAAGATTTTTGACAGAGATACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGGCACA
127 TGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACA
* * *
2343 TTGGATTTAAGTATTTGTTTTTACGAGCATCTAAATCCTGTTTCGATTTAATTATAAATAAATTC
192 TTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTT-AATTTAATTATAAATAAATTC
* *
2408 -AAAAAAA-GGAAAAATGATATTCGAAGCATGAAAAACTCTTAAATTTTTTTTTTTGCATAGAAT
256 GAAAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAA---TTTTTTTTGCATAGAAT
2471 TA
318 TA
* * * * *
2473 TATATTTTTTCTGAGTATTGTGGTAAAAAATACAGAAAAATTTTTTCGAGTCAGTTTTTAGCCGA
1 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATATTTT-GGGTAAGTTTTTAGCCGA
* ** * *
2538 AATCGTATAGT--CATCACGGTTTTGGGGCTAACCTAAAAACGCGTTTCGGGA-TCTGGTCTCAA
65 AATCGTATACTAACATCACGG-TTT----CTAGGCTAAAAACGCGTTTCGGGACTCCGG-CTCAG
* * * * **
2600 ATTTGCAAGATTTTTGGCAGAAACACTGCTTGAGATATCTGTATTCATCAAACCAAATCTCAGTT
124 TTTTGCAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
* *
2665 ACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTAGATTTAATTA-AATATAA
189 ACATTGGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTA-ATTTAATTATAA-ATAA
* * *
2729 ATTCGAAAAAAAAAT-TAAAAATGATATTCGAAGCATGAAAAACTCTTCAATTTTGTTTGCATAG
252 ATTCG--AAAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTGCATAG
2793 AATTA
315 AATTA
* * * *
2798 TAAATTTTTAT-TCAGTATTGCGGCAAAAAATTCAGAAAAATCTTTTGGGTAAGTTTTTAGCCGA
1 TATATTTTT-TCTGAGTATTGTGGCAAAAAATTCAGAAAAATATTTTGGGTAAGTTTTTAGCCGA
* * * *
2862 AATCGCAAACTAACTATCACGGTTTCAAGGCTAAAAATGCGTTTCGGGACTCCGGCTCAGTTTTG
65 AATCGTATACTAAC-ATCACGGTTTCTAGGCTAAAAACGCGTTTCGGGACTCCGGCTCAGTTTTG
*
2927 -AAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACATT
129 CAAGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATT
2991 GGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTATAAATAAATTCGA
194 GGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTT-AATTTAATTATAAATAAATTCGA
*
3056 AAAAAATGGAAAAATGATATTTGAAGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTA
258 AAAAAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTT-TTTGCATAGAATTA
*
3119 TATATTTTTTTTGAGT
1 TATATTTTTTCTGAGT
3135 CAAGCATGAA
Statistics
Matches: 1339, Mismatches: 195, Indels: 186
0.78 0.11 0.11
Matches are distributed among these distances:
308 8 0.01
309 7 0.01
312 2 0.00
313 4 0.00
314 9 0.01
315 64 0.05
316 25 0.02
317 16 0.01
318 35 0.03
319 140 0.10
320 88 0.07
321 251 0.19
322 120 0.09
323 52 0.04
324 90 0.07
325 256 0.19
326 30 0.02
327 72 0.05
328 50 0.04
329 1 0.00
330 2 0.00
332 10 0.01
333 7 0.01
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.36
Consensus pattern (319 bp):
TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAATATTTTGGGTAAGTTTTTAGCCGAA
ATCGTATACTAACATCACGGTTTCTAGGCTAAAAACGCGTTTCGGGACTCCGGCTCAGTTTTGCA
AGATTTTTGGCAGAAAGACTGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGG
ATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTAATTTAATTATAAATAAATTCGAAAA
AAATGGAAAAATGATATTCGAAGCATGAAAAACCCTTCAATTTTTTTTGCATAGAATTA
Found at i:3294 original size:201 final size:200
Alignment explanation
Indices: 2949--3335 Score: 577
Period size: 201 Copynumber: 1.9 Consensus size: 200
2939 AGAAAGACTG
* * **
2949 CTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACATTGGATTTAAGTATTTGTTTTTACG
1 CTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACATTGAATTTAAGGATTTAATTTTACG
* **
3014 AGCATCTGAATCTTGTTTCAATTTAATTATAAATAAATTCGAAAAAAATGGAAAAATGATATTTG
66 AGCATCTGAATCTTGTTTCAATTTAATTAAAAATAAATTCGAAAAAAAT-GAAAAATGATATCCG
* *
3079 AAGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTATA-TATTTTTTT-TGAGTCAAGCAT
130 AAGCATGAAAAACCCTTCAAATTTT-TTGGCATAGAATTATAGT-TTTTTTTCTGAGTCAAGCAT
3142 GAAAAACC
193 GAAAAACC
*
3150 CTTGAAATATCTATGTTCATCAAACCAAATCTCAGAC-ACATTGAATTTAAGGATTTAATTTTAC
1 CTTGAAATATCTATATTCATCAAACCAAATCTCAG-CTACATTGAATTTAAGGATTTAATTTTAC
*
3214 GAGCATCTGTATCTTGTTT-AGATTTAATTAAAAATAAATTCGAAAAAATCAT-AAAAATGATAT
65 GAGCATCTGAATCTTGTTTCA-ATTTAATTAAAAATAAATTCGAAAAAA--ATGAAAAATGATAT
3277 CCGAAGCATGAAAAACCCTTCAAATTTTTTGGCATAGAATTATAGTTTTTTTTCTGAGT
127 CCGAAGCATGAAAAACCCTTCAAATTTTTTGGCATAGAATTATAGTTTTTTTTCTGAGT
3336 TTTGTTGAAA
Statistics
Matches: 169, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
200 23 0.14
201 143 0.85
202 1 0.01
203 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (200 bp):
CTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACATTGAATTTAAGGATTTAATTTTACG
AGCATCTGAATCTTGTTTCAATTTAATTAAAAATAAATTCGAAAAAAATGAAAAATGATATCCGA
AGCATGAAAAACCCTTCAAATTTTTTGGCATAGAATTATAGTTTTTTTTCTGAGTCAAGCATGAA
AAACC
Found at i:3637 original size:532 final size:521
Alignment explanation
Indices: 2628--4018 Score: 1986
Period size: 532 Copynumber: 2.6 Consensus size: 521
2618 AGAAACACTG
* * * ** * **
2628 CTTGAGATATCTGTATTCATCAAACCAAATCTCAGTTACATTGGATTTAAGGATTTGTTTTTACG
1 CTTGAAATATCTATGTTCATCAAACCAAATCTCAGACACATTGAATTTAAGGATTTAATTTTACG
* * * ** *
2693 AGCATTTGAATCTTGTTTAGATTTAATTAAATATAAATTCGAAAAAAAAATTAAAAATGATATTC
66 AGCATCTGTATCTTGTTTAGATTTAATTAAAAATAAATTCGAAAAAATCA-TAAAAATGATATCC
* * * * *
2758 GAAGCATGAAAAACTCTTC-AATTTTGTTTGCATAGAATTATAAATTTTTATTC--AGTATTGCG
130 GAAGCATGAAAAACCCTTCAAATTTT-TTGGCATAGAATTAT--ATTTTTTTTCTGAGTTTTGTG
** * * * * * *
2820 GCAAAAAATTCAGAAAAATCTTTT-GGGTAAGTTTTTAGCCGAAATCGCAAACTAACTATCACGG
192 GCAAAAAATTCAGAAAAAAATTTTCTGATCAGTTTTTAGCGGAAATCGTAAA-TAACCATCACGG
** * * * * *
2884 TTTCAAGGCTAAAAATGCGTTTCGGGACTCCGGCTCAGTTTTG-AAGATTTTTGGCAGAAAGACT
256 TTT-TGGGCTAGAAATGCGTTTCGGGACCCCGGCTCAGTTTTGCAAGATTTTTGGTAGAAATAAT
* *
2948 GCTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACATTGGATTTAAGTATTTGTTTTTAC
320 GCTTGAAATATCTATATTCATCAAACCAAATCTCAGCTACATTGGATTTAAGAATTTATTTTTAC
** *
3013 GAGCATCTGAATCTTGTTTCAATTTAATTATAAATAAATTCGAAAAAAATGGAAAAATGATATTT
385 GAGCATCTGAATAATGTTCCAATTTAATTATAAATAAATTCGAAAAAAATGGAAAAATGATATTT
*
3078 GAAGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTATATATTTTTTTTGAGTCAAGCATG
450 GAAGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTATATATTTTTTCTGAGTCAAGCATG
3143 AAAAACC
515 AAAAACC
3150 CTTGAAATATCTATGTTCATCAAACCAAATCTCAGACACATTGAATTTAAGGATTTAATTTTACG
1 CTTGAAATATCTATGTTCATCAAACCAAATCTCAGACACATTGAATTTAAGGATTTAATTTTACG
3215 AGCATCTGTATCTTGTTTAGATTTAATTAAAAATAAATTCGAAAAAATCATAAAAATGATATCCG
66 AGCATCTGTATCTTGTTTAGATTTAATTAAAAATAAATTCGAAAAAATCATAAAAATGATATCCG
* *
3280 AAGCATGAAAAACCCTTCAAATTTTTTGGCATAGAATTATAGTTTTTTTTCTGAGTTTTGTTGAA
131 AAGCATGAAAAACCCTTCAAATTTTTTGGCATAGAATTATA-TTTTTTTTCTGAGTTTTGTGGCA
*
3345 AAAAATTCAGAAAAAAATTTTCTGATCAGTTTTTAGCGGAAATCGTATAATAACCATCACGATTT
195 AAAAATTCAGAAAAAAATTTTCTGATCAGTTTTTAGCGGAAATCGTA-AATAACCATCACGGTTT
*
3410 TGGGCTAGAAACGCGTTTCGGGACCCCCGGGACCCCGGCTCAGTTTTGCAAGATTTTTGGTAGAA
259 TGGGCTAGAAATGCGTTT---------CGGGACCCCGGCTCAGTTTTGCAAGATTTTTGGTAGAA
* *
3475 ATAATGCTTGAAATATCTATATTCATCAAAGCAAATCTCAG-TCGCATTGGATTTAAGAATTTAT
315 ATAATGCTTGAAATATCTATATTCATCAAACCAAATCTCAGCT-ACATTGGATTTAAGAATTTAT
* * * * *
3539 TTTTACGTGCATCTTAATAATGTTCCGATTTAATTATAAATATATTCGAAAAAAATGGAAAATTG
379 TTTTACGAGCATCTGAATAATGTTCCAATTTAATTATAAATAAATTCGAAAAAAATGGAAAAATG
*
3604 ATATTTGAAGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTCTATATTTTTTCTGAGTCA
444 ATATTTGAAGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTATATATTTTTTCTGAGTCA
*
3669 GGCATGAAAAACC
509 AGCATGAAAAACC
* *
3682 GTTGAAATATCTATGTTCATCAAACCAAATCTTAGACACATTGAATTTAAGGATTTAATTTTACG
1 CTTGAAATATCTATGTTCATCAAACCAAATCTCAGACACATTGAATTTAAGGATTTAATTTTACG
3747 AGCATCTGTATCTTGTTTAGATTTAATTAAAAATAAATTCGAAAAAAATC-TAAAAATGATATCC
66 AGCATCTGTATCTTGTTTAGATTTAATTAAAAATAAATTCG-AAAAAATCATAAAAATGATATCC
* *
3811 GAAGCATGAAAAACCCTTCAATTTTTTTGGCATAGAATTATATATTTTTTCTGAGTTTTGTGGCA
130 GAAGCATGAAAAACCCTTCAAATTTTTTGGCATAGAATTATATTTTTTTTCTGAGTTTTGTGGCA
*
3876 AAAAATTCAGAAAAAAATTTTCTGATACAGTTTTTAGCCGAAAATACGTACAATAACCATCACGG
195 AAAAATTCAGAAAAAAATTTTCTGAT-CAGTTTTTAG-CGGAAAT-CGTA-AATAACCATCACGG
3941 TTTTGGGGCTAGAAATGCGTTTCGGGACCCCGGCTCAAGTTTTGCAAGATTTTTGGTAGAAATAA
256 TTTT-GGGCTAGAAATGCGTTTCGGGACCCCGGCTC-AGTTTTGCAAGATTTTTGGTAGAAATAA
4006 TGCTTGAAATATC
319 TGCTTGAAATATC
Statistics
Matches: 783, Mismatches: 63, Indels: 41
0.88 0.07 0.05
Matches are distributed among these distances:
519 1 0.00
520 8 0.01
521 45 0.06
522 149 0.19
523 33 0.04
524 2 0.00
526 14 0.02
527 41 0.05
531 67 0.09
532 372 0.48
533 14 0.02
534 21 0.03
535 16 0.02
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (521 bp):
CTTGAAATATCTATGTTCATCAAACCAAATCTCAGACACATTGAATTTAAGGATTTAATTTTACG
AGCATCTGTATCTTGTTTAGATTTAATTAAAAATAAATTCGAAAAAATCATAAAAATGATATCCG
AAGCATGAAAAACCCTTCAAATTTTTTGGCATAGAATTATATTTTTTTTCTGAGTTTTGTGGCAA
AAAATTCAGAAAAAAATTTTCTGATCAGTTTTTAGCGGAAATCGTAAATAACCATCACGGTTTTG
GGCTAGAAATGCGTTTCGGGACCCCGGCTCAGTTTTGCAAGATTTTTGGTAGAAATAATGCTTGA
AATATCTATATTCATCAAACCAAATCTCAGCTACATTGGATTTAAGAATTTATTTTTACGAGCAT
CTGAATAATGTTCCAATTTAATTATAAATAAATTCGAAAAAAATGGAAAAATGATATTTGAAGCA
TGAAAAACCCTTCAATTTTTGTTTGCATAGAATTATATATTTTTTCTGAGTCAAGCATGAAAAAC
C
Found at i:3827 original size:201 final size:200
Alignment explanation
Indices: 3482--3866 Score: 547
Period size: 201 Copynumber: 1.9 Consensus size: 200
3472 GAAATAATGC
* * * * * *
3482 TTGAAATATCTATATTCATCAAAGCAAATCTCAGTCGCATTGGATTTAAGAATTTATTTTTACGT
1 TTGAAATATCTATATTCATCAAACCAAATCTCAGACACATTGAATTTAAGAATTTAATTTTACGA
* * * * * **
3547 GCATCTTAATAATGTTCCGATTTAATTATAAATATATTCGAAAAAAATGGAAAATTGATATTTGA
66 GCATCTTAATAATGTTCAGATTTAATTAAAAATAAATTCGAAAAAAATCGAAAAATGATATCCGA
* *
3612 AGCATGAAAAACCCTTCAATTTTTGTTTGCATAGAATTCTATATTTTTTCTGAGTCAGGCATGAA
131 AGCATGAAAAACCCTTCAATTTTT-TTGGCATAGAATTATATATTTTTTCTGAGTCAGGCATGAA
3677 AAACCG
195 AAACCG
* * *
3683 TTGAAATATCTATGTTCATCAAACCAAATCTTAGACACATTGAATTTAAGGATTTAATTTTACGA
1 TTGAAATATCTATATTCATCAAACCAAATCTCAGACACATTGAATTTAAGAATTTAATTTTACGA
** * *
3748 GCATCTGT-ATCTTGTTTAGATTTAATTAAAAATAAATTCGAAAAAAATCTAAAAATGATATCCG
66 GCATCT-TAATAATGTTCAGATTTAATTAAAAATAAATTCGAAAAAAATCGAAAAATGATATCCG
3812 AAGCATGAAAAACCCTTCAATTTTTTTGGCATAGAATTATATATTTTTTCTGAGT
130 AAGCATGAAAAACCCTTCAATTTTTTTGGCATAGAATTATATATTTTTTCTGAGT
3867 TTTGTGGCAA
Statistics
Matches: 161, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
200 28 0.17
201 132 0.82
202 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (200 bp):
TTGAAATATCTATATTCATCAAACCAAATCTCAGACACATTGAATTTAAGAATTTAATTTTACGA
GCATCTTAATAATGTTCAGATTTAATTAAAAATAAATTCGAAAAAAATCGAAAAATGATATCCGA
AGCATGAAAAACCCTTCAATTTTTTTGGCATAGAATTATATATTTTTTCTGAGTCAGGCATGAAA
AACCG
Done.