Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000545.1 Corchorus capsularis cultivar CVL-1 contig00545, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27


Found at i:419 original size:7 final size:7

Alignment explanation


    Indices: 406--442  Score: 65
    Period size: 7  Copynumber: 5.3  Consensus size: 7

        396 AGCCCAATAT

                   
        406 AAAGGAA
          1 AAAGGAA

            *      
        413 GAAGGAA
          1 AAAGGAA

                   
        420 AAAGGAA
          1 AAAGGAA

                   
        427 AAAGGAA
          1 AAAGGAA

                   
        434 AAAGGAA
          1 AAAGGAA

              
        441 AA
          1 AA

        443 TAAAATAAAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00


Consensus pattern (7 bp):   
AAAGGAA

Done.