Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005450.1 Corchorus capsularis cultivar CVL-1 contig05468, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7204
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32


Found at i:6935 original size:2 final size:2

Alignment explanation


    Indices: 6928--6963  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       6918 AGATCTCAAA

                                  *                              
       6928 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       6964 TTGGAAAAAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.