Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005452.1 Corchorus capsularis cultivar CVL-1 contig05470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4399
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35


Found at i:9 original size:2 final size:2

Alignment explanation


    Indices: 3--38  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

          1 AT

                                                                 
          3 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         39 CTAGTAAATA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1201 original size:20 final size:21

Alignment explanation


    Indices: 1176--1217  Score: 68
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1166 CTTGTAATTT

                    *            
       1176 AAAGTTGTTAAAA-AGCTATA
          1 AAAGTTGTCAAAATAGCTATA

                                 
       1196 AAAGTTGTCAAAATAGCTATA
          1 AAAGTTGTCAAAATAGCTATA

             
       1217 A
          1 A

       1218 CGCTTTCCAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  20   12  0.60
  21    8  0.40

ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29


Consensus pattern (21 bp):   
AAAGTTGTCAAAATAGCTATA

Done.