Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005457.1 Corchorus capsularis cultivar CVL-1 contig05475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25607

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
208--301
43
2.2
43
96
0
170
34
14
12
38
1.85
3307--3343
1
37.0
1
94
0
65
97
2
0
0
0.18
10596--10646
25
2.0
25
96
0
93
41
15
21
21
1.90
15075--15158
32
2.6
32
100
0
168
16
16
22
44
1.87
20336--20364
15
1.9
15
100
0
58
48
0
17
34
1.47
21876--21962
33
2.6
33
87
5
122
32
5
22
39
1.78
22193--22223
6
5.2
6
100
0
62
32
51
0
16
1.44
23115--23154
21
1.9
21
89
0
62
55
2
0
42
1.13
24097--24151
19
3.0
20
70
26
57
69
0
0
30
0.89
25284--25360
29
2.6
28
76
15
84
40
28
14
16
1.88

Tables:   1

The End!