Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005462.1 Corchorus capsularis cultivar CVL-1 contig05480, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7604
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33


Found at i:5261 original size:13 final size:13

Alignment explanation


    Indices: 5243--5267  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       5233 TTATTAGAGC

                         
       5243 TTTTTTCTTTTTT
          1 TTTTTTCTTTTTT

                        
       5256 TTTTTTCTTTTT
          1 TTTTTTCTTTTT

       5268 GCCGGATTTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (13 bp):   
TTTTTTCTTTTTT
Done.