Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005464.1 Corchorus capsularis cultivar CVL-1 contig05482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16018
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:7677 original size:2 final size:2

Alignment explanation


    Indices: 7666--7699  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       7656 TAAATGTTAC

                                                                
       7666 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       7700 CCTTCAAGAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   30  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:15556 original size:26 final size:26

Alignment explanation


    Indices: 15527--15579  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

      15517 AGGGTTTAGG

                                      
      15527 GTTGCTTATGGATCAAGCTAAATGAA
          1 GTTGCTTATGGATCAAGCTAAATGAA

                                      
      15553 GTTGCTTATGGATCAAGCTAAATGAA
          1 GTTGCTTATGGATCAAGCTAAATGAA

             
      15579 G
          1 G

      15580 GATTATGACT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30


Consensus pattern (26 bp):   
GTTGCTTATGGATCAAGCTAAATGAA
Done.