Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000547.1 Corchorus capsularis cultivar CVL-1 contig00547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1053
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36


Found at i:494 original size:27 final size:27

Alignment explanation


    Indices: 462--530  Score: 111
    Period size: 27  Copynumber: 2.6  Consensus size: 27

        452 GTCTAAGGGT

                                       
        462 ATTTTGGTCATTTTTGCACCCAGGGGC
          1 ATTTTGGTCATTTTTGCACCCAGGGGC

                            *  *       
        489 ATTTTGGTCATTTTTGTACTCAGGGGC
          1 ATTTTGGTCATTTTTGCACCCAGGGGC

                 *         
        516 ATTTTAGTCATTTTT
          1 ATTTTGGTCATTTTT

        531 AGGTTCACCT


Statistics
Matches: 39,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   39  1.00

ACGTcount: A:0.16, C:0.16, G:0.22, T:0.46


Consensus pattern (27 bp):   
ATTTTGGTCATTTTTGCACCCAGGGGC
Done.