Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005488.1 Corchorus capsularis cultivar CVL-1 contig05506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32795

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
417--454
18
2.1
18
100
0
76
39
34
10
15
1.82
1535--1571
11
3.3
11
88
7
56
0
13
0
86
0.57
1532--1568
12
3.1
12
88
0
56
0
18
0
81
0.70
1759--1794
2
18.5
2
94
5
65
50
0
0
50
1.00
2787--2869
12
7.2
12
91
2
127
55
26
8
9
1.61
2780--2869
22
4.0
23
89
5
139
56
25
8
8
1.59
4245--4271
14
1.9
14
100
0
54
37
7
25
29
1.83
6865--6967
12
8.9
12
85
6
133
9
7
25
57
1.57
6865--6974
11
9.7
11
85
5
132
9
8
24
58
1.56
6865--7043
23
7.9
23
71
10
127
9
10
23
56
1.62
13110--13193
44
1.9
44
82
4
107
36
10
21
30
1.88
13109--13202
22
4.3
22
75
0
89
38
9
22
29
1.86
13109--13202
44
2.1
44
78
3
100
38
9
22
29
1.86
14615--14810
97
2.0
97
89
1
302
45
15
15
23
1.84
14975--15412
22
19.9
22
72
2
216
36
12
18
32
1.88
14955--15412
44
10.4
44
74
4
287
36
12
18
32
1.88
14997--15346
110
3.2
110
76
4
283
37
12
17
32
1.87
19256--19292
19
2.0
19
89
5
58
64
0
0
35
0.94
21279--21324
21
2.1
22
84
4
58
30
10
17
41
1.84
23665--23836
81
2.1
82
91
2
283
31
24
9
34
1.87
23846--23876
2
15.5
2
100
0
62
51
0
0
48
1.00
24047--24077
3
10.0
3
93
6
53
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25915--25994
41
2.0
41
82
5
99
45
5
13
36
1.66
28884--28910
12
2.2
12
100
0
54
33
0
44
22
1.53

Tables:   1

The End!