Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005492.1 Corchorus capsularis cultivar CVL-1 contig05510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54696

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1574--1634
30
2.0
30
93
6
106
34
13
6
45
1.69
6000--6056
2
28.5
2
84
7
62
49
5
1
43
1.35
22077--23088
419
2.4
418
88
4
1527
25
27
16
29
1.97
32082--32159
41
1.9
41
91
0
129
26
15
17
39
1.90
34478--34543
29
2.3
30
87
7
93
57
12
10
19
1.63
34496--34580
29
3.0
28
80
16
88
56
16
8
18
1.64
34553--34595
22
2.0
22
90
0
68
48
20
11
18
1.79
35337--35378
23
1.9
21
85
9
57
40
4
16
38
1.70
42302--42413
54
2.1
55
94
5
201
45
10
9
33
1.72
51781--52030
91
2.8
91
85
0
340
30
17
22
30
1.96

Tables:   1

The End!