Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005494.1 Corchorus capsularis cultivar CVL-1 contig05512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6046

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--239
29
8.3
29
88
2
306
28
25
22
23
1.99
366--750
29
14.0
29
80
10
386
27
28
24
20
1.99
366--711
56
6.3
57
81
12
395
27
28
23
20
1.99
383--730
78
4.3
79
81
9
382
27
28
24
20
1.99
865--1028
28
6.2
28
80
12
193
28
32
25
14
1.95
936--1050
47
2.4
47
89
0
176
33
27
24
14
1.95
1011--1051
19
2.2
19
90
0
64
41
24
21
12
1.87
1110--1171
24
2.6
24
97
0
115
33
25
19
20
1.96
1828--1865
6
6.3
6
100
0
76
18
15
0
65
1.27

Tables:   1

The End!