Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005496.1 Corchorus capsularis cultivar CVL-1 contig05514, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4501
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.41


Found at i:1960 original size:2 final size:2

Alignment explanation


    Indices: 1949--1984  Score: 65
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       1939 AAAATTTCTA

                                                                   
       1949 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1985 CTATCAATTG


Statistics
Matches: 33,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   32  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.