Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005501.1 Corchorus capsularis cultivar CVL-1 contig05519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4919
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:1325 original size:27 final size:27

Alignment explanation


    Indices: 1287--1342  Score: 112
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1277 TTCTGTAAAC

                                       
       1287 CTGCAAAAGGTTAGCATATACAAAAAG
          1 CTGCAAAAGGTTAGCATATACAAAAAG

                                       
       1314 CTGCAAAAGGTTAGCATATACAAAAAG
          1 CTGCAAAAGGTTAGCATATACAAAAAG

              
       1341 CT
          1 CT

       1343 CCACTGATTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20


Consensus pattern (27 bp):   
CTGCAAAAGGTTAGCATATACAAAAAG
Done.