Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005509.1 Corchorus capsularis cultivar CVL-1 contig05527, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25084

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1922--1972
19
2.6
19
84
9
59
50
1
0
47
1.12
10668--10728
22
2.9
21
76
23
65
50
0
1
47
1.10
10642--10728
42
2.1
42
83
12
108
50
0
2
47
1.13
10650--10793
36
4.1
34
74
19
109
53
1
2
42
1.24
10689--10796
13
8.2
13
69
25
59
52
1
1
43
1.22
12354--12389
3
12.0
3
100
0
72
66
0
0
33
0.92
14605--14664
26
2.4
24
78
8
57
30
3
1
65
1.19
14874--14913
11
3.6
11
93
0
62
32
37
20
10
1.85
17646--17694
14
3.6
14
75
10
57
0
42
0
57
0.99
21459--21509
24
2.1
25
85
3
68
56
0
9
33
1.32
24991--25018
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!