Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000551.1 Corchorus capsularis cultivar CVL-1 contig00551, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1037
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28


Found at i:178 original size:13 final size:13

Alignment explanation


    Indices: 157--186  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

        147 GATCAAGTAT

                *        
        157 AAAAGTAAAAAGG
          1 AAAAATAAAAAGG

                         
        170 AAAAATAAAAAGG
          1 AAAAATAAAAAGG

                
        183 AAAA
          1 AAAA

        187 CAACTATTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.77, C:0.00, G:0.17, T:0.07


Consensus pattern (13 bp):   
AAAAATAAAAAGG
Done.