Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005514.1 Corchorus capsularis cultivar CVL-1 contig05532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5939
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:650 original size:1 final size:1

Alignment explanation


    Indices: 644--668  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

        634 TATTGACAAG

                                     
        644 AAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAA

        669 CGCAATAAAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.