Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005517.1 Corchorus capsularis cultivar CVL-1 contig05535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15426
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22


Found at i:11900 original size:21 final size:21

Alignment explanation


    Indices: 11874--11920  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

      11864 ATCAGCCCGC

                        * *      
      11874 CAAAATTCGAAATTTGAATTT
          1 CAAAATTCGAAAATCGAATTT

                   *             
      11895 CAAAATTTGAAAATCGAATTT
          1 CAAAATTCGAAAATCGAATTT

            *    
      11916 AAAAA
          1 CAAAA

      11921 AAAAACAAAC


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.51, C:0.09, G:0.09, T:0.32


Consensus pattern (21 bp):   
CAAAATTCGAAAATCGAATTT
Done.