Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000552.1 Corchorus capsularis cultivar CVL-1 contig00552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37


Found at i:65 original size:21 final size:22

Alignment explanation


    Indices: 41--87  Score: 55
    Period size: 21  Copynumber: 2.2  Consensus size: 22

         31 TACTAATCTT

                                   
         41 GTTATCTAAAA-TTACTAAAA-A
          1 GTTAT-TAAAAGTTACTAAAATA

                          *       
         62 GTTA-TAAAAGTTATTAAAATA
          1 GTTATTAAAAGTTACTAAAATA

                 
         83 GTTAT
          1 GTTAT

         88 AATGCTTTCC


Statistics
Matches: 22,  Mismatches: 1, Indels: 5
        0.79            0.04        0.18

Matches are distributed among these distances:
  19    5  0.23
  20    8  0.36
  21    9  0.41

ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38


Consensus pattern (22 bp):   
GTTATTAAAAGTTACTAAAATA

Found at i:88 original size:21 final size:19

Alignment explanation


    Indices: 47--89  Score: 59
    Period size: 20  Copynumber: 2.2  Consensus size: 19

         37 TCTTGTTATC

                               
         47 TAAAATTACTAAAAAGTTA
          1 TAAAATTACTAAAAAGTTA

                     *           
         66 TAAAAGTTATTAAAATAGTTA
          1 TAAAA-TTACTAAAA-AGTTA

               
         87 TAA
          1 TAA

         90 TGCTTTCCAC


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19    5  0.24
  20    8  0.38
  21    8  0.38

ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35


Consensus pattern (19 bp):   
TAAAATTACTAAAAAGTTA
Done.