Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005520.1 Corchorus capsularis cultivar CVL-1 contig05538, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2106
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28


Found at i:493 original size:13 final size:13

Alignment explanation


    Indices: 475--516  Score: 66
    Period size: 13  Copynumber: 3.2  Consensus size: 13

        465 GGATTTTCGA

                         
        475 AGAGAAGGAAAGG
          1 AGAGAAGGAAAGG

                  *      
        488 AGAGAAAGAAAGG
          1 AGAGAAGGAAAGG

             *           
        501 ACAGAAGGAAAGG
          1 AGAGAAGGAAAGG

               
        514 AGA
          1 AGA

        517 AGCCAGAAGA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   25  1.00

ACGTcount: A:0.57, C:0.02, G:0.40, T:0.00


Consensus pattern (13 bp):   
AGAGAAGGAAAGG

Found at i:926 original size:13 final size:13

Alignment explanation


    Indices: 908--934  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        898 AAGTAAGTTC

                         
        908 TAAAGACCTTTGA
          1 TAAAGACCTTTGA

                         
        921 TAAAGACCTTTGA
          1 TAAAGACCTTTGA

             
        934 T
          1 T

        935 GTTTGATTTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33


Consensus pattern (13 bp):   
TAAAGACCTTTGA
Done.