Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005524.1 Corchorus capsularis cultivar CVL-1 contig05542, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5931
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38


Found at i:2395 original size:2 final size:2

Alignment explanation


    Indices: 2383--2419  Score: 67
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       2373 TAGCTAGTTC

                                                                    
       2383 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       2420 TGTAAAAAAT


Statistics
Matches: 34,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   33  0.97

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:2832 original size:12 final size:12

Alignment explanation


    Indices: 2815--2840  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       2805 AGTCACGGAG

                        
       2815 AATCTCTGTCAC
          1 AATCTCTGTCAC

                        
       2827 AATCTCTGTCAC
          1 AATCTCTGTCAC

              
       2839 AA
          1 AA

       2841 CTACCAATTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31


Consensus pattern (12 bp):   
AATCTCTGTCAC
Done.