Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005531.1 Corchorus capsularis cultivar CVL-1 contig05549, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34558

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1946--3174
334
3.7
325
76
7
1088
37
14
13
34
1.85
3365--3442
41
1.9
41
89
0
120
26
14
17
41
1.88
3446--3482
13
2.8
13
91
0
56
35
8
32
24
1.85
4118--4154
5
7.8
5
82
11
51
59
0
18
21
1.38
11403--11773
107
3.5
107
96
0
656
41
9
9
40
1.69
14480--14508
12
2.3
13
94
5
51
17
44
0
37
1.49
20691--20744
29
1.9
28
88
7
83
42
25
18
12
1.86
22489--22571
42
2.0
43
85
7
116
24
18
22
34
1.96
22559--22601
20
2.1
21
86
4
61
39
20
18
20
1.93
28520--28638
24
5.0
24
84
2
150
32
24
5
36
1.79

Tables:   1

The End!