Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005544.1 Corchorus capsularis cultivar CVL-1 contig05562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3428
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.25


Found at i:849 original size:18 final size:18

Alignment explanation


    Indices: 826--861  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        816 CTTATGAAAT

                      *       
        826 TCCAAAAAATTTTCAAAA
          1 TCCAAAAAATCTTCAAAA

                              
        844 TCCAAAAAATCTTCAAAA
          1 TCCAAAAAATCTTCAAAA

        862 AACATTTTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25


Consensus pattern (18 bp):   
TCCAAAAAATCTTCAAAA
Done.