Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005545.1 Corchorus capsularis cultivar CVL-1 contig05563, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24198

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3233--3581
166
2.1
165
86
3
486
38
16
15
29
1.90
3525--3650
66
1.9
66
93
0
216
34
15
15
34
1.90
4754--4788
2
17.5
2
87
0
52
45
5
0
48
1.26
5331--5355
2
12.5
2
100
0
50
52
0
0
48
1.00
9942--10139
92
2.2
92
97
0
371
25
14
12
48
1.78
18315--18345
6
5.2
6
96
0
53
12
48
22
16
1.80
18702--18726
6
4.2
6
100
0
50
36
0
48
16
1.46
22046--22125
39
2.1
39
92
4
135
38
26
17
17
1.92
22951--22978
6
4.7
6
100
0
56
0
17
64
17
1.30
23974--24009
6
6.0
6
93
0
63
0
13
0
86
0.58

Tables:   1

The End!