Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005556.1 Corchorus capsularis cultivar CVL-1 contig05574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8386
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:7267 original size:18 final size:18

Alignment explanation


    Indices: 7246--7284  Score: 60
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       7236 TTAATTTCTT

                *        *    
       7246 TTAATTTAATTAATTAAA
          1 TTAAATTAATTAAGTAAA

                              
       7264 TTAAATTAATTAAGTAAA
          1 TTAAATTAATTAAGTAAA

               
       7282 TTA
          1 TTA

       7285 TATTGAAAAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46


Consensus pattern (18 bp):   
TTAAATTAATTAAGTAAA
Done.