Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005566.1 Corchorus capsularis cultivar CVL-1 contig05584, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3300
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30


Found at i:3091 original size:14 final size:14

Alignment explanation


    Indices: 3074--3100  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       3064 TATAGTGTAT

                          
       3074 GTGTATTAATTATA
          1 GTGTATTAATTATA

                         
       3088 GTGTATTAATTAT
          1 GTGTATTAATTAT

       3101 GTTGTTTGGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52


Consensus pattern (14 bp):   
GTGTATTAATTATA
Done.