Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005570.1 Corchorus capsularis cultivar CVL-1 contig05588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3187

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--500
31
15.6
31
79
3
453
30
30
28
10
1.91
1--500
157
3.2
155
79
5
481
30
30
28
10
1.90
1--509
188
2.7
188
83
2
585
30
30
28
10
1.90
539--648
32
3.5
32
86
1
141
29
30
28
11
1.92
674--712
19
2.1
19
95
0
69
38
23
17
20
1.93
1036--1088
22
2.4
22
87
0
70
18
41
33
5
1.74
1335--2104
63
12.3
63
70
11
303
30
30
27
11
1.92
1362--2100
94
7.9
95
70
11
463
29
30
27
11
1.92
1589--2014
91
4.6
91
72
9
324
31
29
26
12
1.93
1677--1813
32
4.3
32
82
5
143
30
29
27
12
1.93
1398--2100
280
2.5
278
82
5
823
30
30
27
11
1.92
1369--1643
31
8.8
31
80
3
300
29
32
28
10
1.90
1497--1920
186
2.3
183
83
3
526
30
29
26
12
1.93
1954--2008
19
3.2
19
61
28
50
25
36
29
9
1.87
1953--2100
32
4.6
32
98
0
287
25
33
31
9
1.88
2245--2286
22
1.9
22
85
0
57
19
42
33
4
1.72
2715--2911
32
6.2
32
91
2
299
27
32
30
8
1.86
2944--3185
32
7.7
31
77
8
220
28
31
28
11
1.91
2727--3123
217
1.8
217
89
3
620
29
31
28
9
1.89

Tables:   1

The End!