Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005577.1 Corchorus capsularis cultivar CVL-1 contig05595, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4807

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
951--992
22
1.9
22
85
0
57
19
11
21
47
1.81
2477--2666
26
7.2
26
73
17
99
19
17
2
60
1.46
2461--2616
81
1.9
81
82
12
196
17
19
1
61
1.44
2476--2659
54
3.4
52
74
17
137
19
17
2
60
1.46
2461--2590
28
4.8
28
77
12
121
16
20
1
61
1.42
2522--2645
28
4.6
27
76
16
87
18
15
2
63
1.41
2657--2756
7
13.9
7
72
10
76
19
23
2
56
1.52
2657--2773
36
3.2
36
90
1
171
19
23
2
54
1.56
2657--2756
29
3.5
28
72
8
85
19
23
2
56
1.52
2723--2773
22
2.3
22
86
0
66
19
23
1
54
1.54
2758--2814
26
2.2
26
90
6
89
28
15
3
52
1.59
2792--2884
32
2.8
33
85
9
120
27
16
4
51
1.63
2859--2988
30
4.2
30
89
7
197
34
18
4
42
1.71
2794--2991
30
6.3
30
86
6
189
31
17
4
45
1.69
3120--3325
38
5.3
38
91
4
274
28
16
5
50
1.67
3120--3325
77
2.7
75
87
6
279
28
16
5
50
1.67

Tables:   1

The End!