Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005578.1 Corchorus capsularis cultivar CVL-1 contig05596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6081
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.32


Found at i:5193 original size:31 final size:31

Alignment explanation


    Indices: 5155--5216  Score: 97
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       5145 AGTTTTGTAA

                       *                   
       5155 AACTTTTGAAATGCCTATTATACCCTTATTT
          1 AACTTTTGAAACGCCTATTATACCCTTATTT

                         *        *        
       5186 AACTTTTGAAACGTCTATTATATCCTTATTT
          1 AACTTTTGAAACGCCTATTATACCCTTATTT

       5217 GTCTAACATA


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47


Consensus pattern (31 bp):   
AACTTTTGAAACGCCTATTATACCCTTATTT
Done.