Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000558.1 Corchorus capsularis cultivar CVL-1 contig00558, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41


Found at i:757 original size:33 final size:33

Alignment explanation


    Indices: 707--770  Score: 85
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        697 GATTACACTT

                     *                        
        707 AACCCGTAATATATAA-TTGCAATTGGACTAAGA
          1 AACCCGTAAAATATAATTTG-AATTGGACTAAGA

                        *            *     
        740 AACCCGTAAAATGTAATTTGAATTGTACTAA
          1 AACCCGTAAAATATAATTTGAATTGGACTAA

        771 TAAAATTCTA


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  33   24  0.89
  34    3  0.11

ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30


Consensus pattern (33 bp):   
AACCCGTAAAATATAATTTGAATTGGACTAAGA

Found at i:934 original size:2 final size:2

Alignment explanation


    Indices: 921--951  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        911 TTAAACTACT

                      *                                   
        921 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        952 TAATTTCTCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52


Consensus pattern (2 bp):   
TA

Done.