Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005581.1 Corchorus capsularis cultivar CVL-1 contig05599, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1346
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36


Found at i:1247 original size:16 final size:16

Alignment explanation


    Indices: 1226--1259  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1216 TCTGAAATAT

                            
       1226 TTCAGAGCTTTTCTGC
          1 TTCAGAGCTTTTCTGC

                            
       1242 TTCAGAGCTTTTCTGC
          1 TTCAGAGCTTTTCTGC

              
       1258 TT
          1 TT

       1260 TCTGAATTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.12, C:0.24, G:0.18, T:0.47


Consensus pattern (16 bp):   
TTCAGAGCTTTTCTGC
Done.